loopbio

Motif

• Bedbrook, C.N., Nath, R.D., Zhang, L., Linderman, S.W., Brunet, A. and Deisseroth, K. Lifelong behavioral screen reveals an architecture of vertebrate aging  Science  (2026). 10.1126/science.aea9795
• Short, N.E., Warren, E.C., Porter, I.E., Pinto, Y., Rodriguez, J., Sarkisyan, K., Bhatt, A.S., Brown, A.E. and Riglar, D.T. A whole organism screening platform identifies gut microbiome microproteins that modulate host metabolism.  bioRxiv  (2026). 10.64898/2026.02.11.705328
• Crombie, T.A., Pamminger, T., Andersen, E.C. and Glaberman, S. High-Throughput Toxicity Screening with C. elegans: Current Platforms, Key Advantages, and Future Directions  Environmental Science & Technology  (2026). 10.1021/acs.est.5c12562
• Bailly, T.P., Rossi, M., Valdés-Rodríguez, S., Schmitt, T., Frank, E.T. and Kronauer, D.J. Tolerance toward foreigners in ants requires chronic exposure for establishment but only sporadic exposure for maintenance  Current Biology  (2026). 10.1016/j.cub.2026.02.041
• Bhat, B.A., Jiang, N.J., Halitschke, R. and Ulrich, Y. Nematode infections induce distinct chemical signatures and provoke aggression in ants.  Biology Letters  (2026). 10.1098/rsbl.2025.0716
• de Guinea, M., Landesman, R., Madden, J.R., Bugnyar, T., Bartan, Y. and Nathan, R. Integrating Lab‐and Field‐Based Approaches to Decipher Individuals' Response to Anthropogenic Change.  Ecology Letters  (2026). 10.1111/ele.70366
• Völter, C. J., Gerwisch, K., Berg, P., Virányi, Z. & Huber, L. Using mobile eye tracking to study dogs' understanding of human referential communication  Proceedings of the Royal Society B  (2025). 10.1098/rspb.2024.2765
• Mastronardo, M. High-throughput Behavioral Assay (HTBA)  protocols.io  (2025). 10.17504/protocols.io.eq2ly4xzplx9/v1
• Horejsi, R.V., Nelson, C.N., De Ruyter, A., Gensch, H., Maasz-Seawright, S., Weber, C., Willett, S., Olson, S.A. and Wheeler, N.J. Quantitative ethology of schistosome miracidia characterizes a conserved snail peptide that inhibits host recognition  Plos Pathogens  (2025). 10.1371/journal.ppat.1013766
• Weheliye, W.H., Rodriguez, J., Feriani, L., Javer, A., Uhlmann, V. and Brown, A.E. A neural network model enables worm tracking in challenging conditions and increases signal-to-noise ratio in phenotypic screens.  PLOS Computational Biology  (2025). 10.1371/journal.pcbi.1013345
• O'Brien, T.J., Barlow, I.L., Feriani, L. and Brown, A.E. High-throughput tracking enables systematic phenotyping and drug repurposing in C. elegans disease models  eLife  (2025). 10.7554/elife.92491.4
• García-Garví, A. and Sánchez-Salmerón, A.J. High-throughput behavioral screening in Caenorhabditis elegans using machine learning for drug repurposing.  Scientific Reports  (2025). 10.1038/s41598-025-10370-x
• Perez, D.M., Greenway, R., Stier, T., Font-Massot, N., Pertzelan, A. and Ding, S.S. Towering behavior and collective dispersal in Caenorhabditis nematodes  Current Biology  (2025). 10.1016/j.cub.2025.05.026
• Sutkus, L.T., Sommer, K.M., Li, Z., Sutton, B.P., Donovan, S.M. and Dilger, R.N. Experimentally induced colitis impacts myelin development and home-cage behavior in young pigs regardless of supplementation with oral gamma-cyclodextrin-encapsulated tributyrin.  Frontiers in neuroscience  (2025). 10.3389/fnins.2025.1484497
• Sommer, K.M., Sutkus, L., Senthil, P. and Dilger, R.N. Feeding style alters the growth and behavior of artificially-reared pigs  Journal of animal science  (2025). 10.1093/jas/skaf098
• Sayin, S., Couzin-Fuchs, E., Petelski, I., Günzel, Y., Salahshour, M., Lee, C.Y., Graving, J.M., Li, L., Deussen, O., Sword, G.A. and Couzin, I.D. The behavioral mechanisms governing collective motion in swarming locusts.  Science  (2025). 10.1126/science.adq7832
• Matchette, S.R., Butler, S.J., Llanos, C.E.R. and Herbert-Read, J.E. Environmental visual complexity increases the foraging success of mesopredators by promoting explorative behaviours.  Animal Behaviour  (2025). 10.1016/j.anbehav.2024.123057
• Churgin, A. T. C., Wang, Y., Brown, A. J., O’Connell, K. J. & Alkema, M. J. High-throughput behavioural phenotyping of 25 C. elegans disease models including patient-specific mutations  BMC Biology  (2025). 10.1186/s12915-025-02368-8
• Serrano-Saiz, S. A. & Hobert, O. Pervasive homeobox gene function in the male-specific nervous system of Caenorhabditis elegans  Development  (2025). 10.1242/dev.204958
• Goodman, H. R. & Zhen, M. Neuroendocrine control of synaptic transmission by PHAC-1 in Caenorhabditis elegans  Journal of Neuroscience  (2025). 10.1523/jneurosci.1767-23.2024
• Barlow, I. & Shirtliff-Hinds, T. Disease model screen protocol v2  protocols.io  (2025). 10.17504/protocols.io.kxygx9y5og8j/v2
• Häfker, N.S., Holcik, L., Mat, A.M., Ćorić, A., Vadiwala, K., Beets, I., Stockinger, A.W., Atria, C.E., Hammer, S., Revilla-i-Domingo, R. and Schoofs, L. Molecular circadian rhythms are robust in marine annelids lacking rhythmic behavior.  PLOS Biology  (2024). 10.1371/journal.pbio.3002572
• Altafi, M., Chen, C., Korotkova, T. and Ponomarenko, A. Sequential activation of lateral hypothalamic neuronal populations during feeding and their assembly by gamma oscillations.  Journal of Neuroscience  (2024). 10.1523/jneurosci.0518-24.2024
• Golden, R.K., Sutkus, L.T., Donovan, S.M. and Dilger, R.N. Dietary supplementation of 3′-sialyllactose or 6′-sialyllactose elicits minimal influence on cognitive and brain development in growing pigs  Frontiers in Behavioral Neuroscience  (2024). 10.3389/fnbeh.2023.1337897
• Golden, R.K. and Dilger, R.N. Determining underlying influences of data variability in the novel object recognition paradigm as used with young pigs.  Frontiers in Behavioral Neuroscience  (2024). 10.3389/fnbeh.2024.1434489
• Kaneko, T., Matsumoto, J., Lu, W., Zhao, X., Ueno-Nigh, L.R., Oishi, T., Kimura, K., Otsuka, Y., Zheng, A., Ikenaka, K. and Baba, K. Deciphering social traits and pathophysiological conditions from natural behaviors in common marmosets.  Current Biology  (2024). 10.1016/j.cub.2024.05.033
• Henry, L.P., Fernandez, M., Wolf, S., Abhyankar, V. and Ayroles, J.F. Wolbachia impacts microbiome diversity and fitness‐associated traits for Drosophila melanogaster in a seasonally fluctuating environment.  Ecology and evolution  (2024). 10.1002/ece3.70004digital object identifier (doi)
• Zhukovskaya, A., Zimmerman, C. A., Willmore, L., Pan Vazquez, A., Janarthanan, S., Falkner, A. & Witten, I. B. Heightened lateral habenula activity during stress produces brainwide and behavioral substrates of susceptibility  Neuron  (2024). 10.1016/j.neuron.2024.09.009
• Chen, C., Altafi, M., Corbu, M.A., Trenk, A., van den Munkhof, H., Weineck, K., Bender, F., Carus-Cadavieco, M., Bakhareva, A., Korotkova, T. and Ponomarenko, A. The dynamic state of a prefrontal–hypothalamic–midbrain circuit commands behavioral transitions.  Nature Neuroscience  (2024). 10.1038/s41593-024-01598-3
• Takahashi, K., Nishimura, H., Tsukada, Y. & Iino, Y. Conflict during learning reconfigures the neural representation of positive valence and approach behavior  Current Biology  (2024). 10.1016/j.cub.2024.10.024
• Willmore, L., Minerva, A.R., Engelhard, B., Murugan, M., McMannon, B., Oak, N., Thiberge, S.Y., Peña, C.J. and Witten, I.B. Overlapping representations of food and social stimuli in mouse VTA dopamine neurons.  Neuron  (2023). 10.1016/j.neuron.2023.08.003
• Krumpholz, C., Quigley, C., Fusani, L. and Leder, H. Vienna Talking Faces (ViTaFa): A multimodal person database with synchronized videos, images, and voices.  Behavior Research Methods  (2023). 10.3758/s13428-023-02264-5
• Matsumoto, J., Kaneko, T., Kimura, K., Negrete, S.B., Guo, J., Suda-Hashimoto, N., Kaneko, A., Morimoto, M., Nishimaru, H., Setogawa, T. and Go, Y. Three-dimensional markerless motion capture of multiple freely behaving monkeys for automated characterization of social behavior.  arXiv  (2023). 10.1101/2023.09.13.556332
• Hoffmann A., Couzin-Fuchs, E. Active smelling in the American cockroach  Journal of Experimental Biology  (2023). 10.1242/jeb.245337
• Abayev-Avraham, M., Salzberg, Y., Gliksberg, D., Oren-Suissa, M. & Rosenzweig, R. DNAJB6 mutants display toxic gain of function through unregulated interaction with Hsp70 chaperones  Nature Communications  (2023). 10.1038/s41467-023-42735-z
• Völter C., Lonardo L., Steinmann M. G., Ramos C. F., Gerwisch K., Schranz M.T., Dobernig I., Huber L Unwilling or unable? Using three-dimensional tracking to evaluate dogs' reactions to differing human intentions.  Proceedings of the Royal Society B  (2023). 10.1098/rspb.2022.1621
• Neubauer, L. C., Davidson, J. D., Wild, B., Dormagen, D. M., Landgraf, T., Couzin, I. D., & Smith, M. L. Honey bee drones are synchronously hyperactive inside the nest.  bioRxiv  (2023). 10.1101/2023.01.19.524638
• Roemschied, F.A., Pacheco, D.A., Aragon, M.J., Ireland, E.C., Li, X., Thieringer, K., Pang, R. & Murthy, M. Flexible circuit mechanisms for context-dependent song sequencing  Nature  (2023). 10.1038/s41586-023-06632-1
• Pereira  T.D. et al. SLEAP: A deep learning system for multi-animal pose tracking  Nature Methods  (2022). 10.1038/s41592-022-01426-1
• Snir, O., Alwaseem, H., Heissel, S., Sharma, A., Valdés-Rodríguez, S., Carroll, T.S., Jiang, C.S., Razzauti, J. and Kronauer The pupal moulting fluid has evolved social functions in ants  Nature  (2022). 10.1038/s41586-022-05480-9
• Hoffmann, A., Couzin-Fuchs, E. Active smelling in the American cockroach  bioRxiv  (2022). 10.1101/2022.11.23.517676
• Smith, M. L., Davidson, J. D., Wild, B., Dormagen, D. M., Landgraf, T., & Couzin, I. D. Behavioral variation across the days and lives of honey bees.  iScience  (2022). 10.1016/j.isci.2022.104842
• Njume, F. N. et al. A Lipid Transfer Protein Ensures Nematode Cuticular Impermeability.  iScience [preprint]  (2022). 10.2139/ssrn.4052955
• Mitoyen, C., Quigley, C., Canoine, V., Colombo, S., Woelfl, S. and Fusani, L. Alteration of the temporal association between courtship audio and visual components affects female sexual response.  Integrative Zoology  (2022). 10.1111/1749-4877.12670
• Barlow, I., Feriani, L., Minga, E., McDermott-Rouse, A., O’Brien, T., Liu, Z., Hofbauer, M., Stowers, J. R., Andersen, E. C., Ding, S. S., & Brown, A. E. X. Megapixel camera arrays for high-resolution animal tracking in multiwell plates.  Communications Biology  (2022). 10.1038/s42003-022-03206-1
• Cai, S., Wang, X., Li, W. & Ou, G. A lipid transfer protein ensures nematode cuticular impermeability  iScience  (2022). 10.1016/j.isci.2022.105357
• Wang, Z. Y., McKenzie-Smith, G. C., Liu, W., Cho, H. J., Pereira, T., Dhanerawala, Z., Shaevitz, J. W., & Kocher, S. D. Isolation disrupts social interactions and destabilizes brain development in bumblebees.  bioRxiv  (2021). 10.1101/2021.12.16.472962
• Rajan, V., Babu, V., Häfker, N. S., Arboleda, E., Poehn, B., Gossenreiter, T., Gerrard, E., Hofbauer, M., Mühlestein, C., Bileck, A., Gerner, C., Ribera D'Alcala, M., Buia, M. C., Hartl, M., Lucas, R. J. & Tessmar-Raible, K. Seasonal variation in UVA light drives hormonal and behavioural changes in a marine annelid via a ciliary opsin.  Nature Ecology & Evolution  (2021). 10.1038/s41559-020-01356-1
• Zekoll T, Waldherr M and Tessmar-Raible K Characterization of tmt-opsin2 in Medaka Fish Provides Insight Into the Interplay of Light and Temperature for Behavioral Regulation.  Frontiers in Physiology  (2021). 10.3389/fphys.2021.726941
• Fontinha, B. M., Zekoll, T., Al-Rawi, M., Gallach, M., Reithofer, F., Barker, A. J., Hofbauer, M., Fischer, R. M., Von Haeseler, A., Baier, H. & Tessmar-Raible, K. TMT-Opsins differentially modulate medaka brain function in a context-dependent manner.  PLOS Biology  (2021). 10.1371/journal.pbio.3001012
• Janisch, J., Mitoyen, C., Perinot, E., Spezie, G., Fusani, L. & Quigley, C. Video Recording and Analysis of Avian Movements and Behavior: Insights from Courtship Case Studies.  Integrative and Comparative Biology  (2021). 10.1093/icb/icab095
• McDermott‐Rouse, A., Minga, E., Barlow, I., Feriani, L., Harlow, P. H., Flemming, A. J., & Brown, A. E. X. Behavioral fingerprints predict insecticide and anthelmintic mode of action.  Molecular Systems Biology  (2021). 10.15252/msb.202110267
• Revilla-i-Domingo, R., Rajan, V. B. V., Waldherr, M., Prohaczka, G., Musset, H., Orel, L., Gerrard, E., Smolka, M., Stockinger, A., Farlik, M., Lucas, R. J., Raible, F., & Tessmar-Raible, K. Analyses of Cephalic and Non-cephalic Sensory Cell Types Provide Insight into Joint Photo- and Mechanoreceptor Evolution.  eLife  (2021). 10.7554/elife.66144
• Janisch, J., Perinot, E., Fusani, L. & Quigley, C. Deciphering choreographies of elaborate courtship displays of golden-collared manakins using markerless motion capture.  Ethology  (2021). 10.1111/eth.13161
• Smith, M.L., Davidson, J.D., Wild, B., Dormagen, D.M., Landgraf, T. and Couzin, I.D The dominant axes of lifetime behavioral variation in honey bees.  bioRxiv  (2021). 10.1101/2021.04.15.440020
• Roemschied, F. A., Pacheco, D. A., Ireland, E. C., Li, X., Aragon, M. J., Pang, R., & Murthy, M. Flexible Circuit Mechanisms for Context-Dependent Song Sequencing.  bioRxiv  (2021). 10.1101/2021.11.01.466727
• Mitoyen, C., Quigley, C., Boehly, T. & Fusani L. Female behaviour is differentially associated with specific components of multimodal courtship in ring doves.  Animal Behaviour  (2021). 10.1016/j.anbehav.2020.12.014
• Günzel, Y., McCollum, J., Paoli, M., Galizia, C. G., Petelski, I. & Couzin-Fuchs E. Social modulation of individual preferences in cockroaches.  iScience  (2020). 10.1016/j.isci.2020.101964
• Li, L., Nagy, M., Graving, J. M., Bak-Coleman, J., Xie, G. & Couzin, I. D.  Vortex phase matching as a strategy for schooling in robots and in fish.  Nature Communications  (2020). 10.1038/s41467-020-19086-0
• Barlow, I., McDermott-Rouse, A. & Feriani, L. Syngenta divergent strain screen protocol  protocols.io  (2020). 10.17504/protocols.io.bjpukmjw
• Arboleda, E., Zurl, M., Waldherr, M. and Tessmar-Raible, K. Differential impacts of the head on Platynereis dumerilii peripheral circadian rhythms.  Frontiers in Physiology  (2019). 10.3389/fphys.2019.00900
• Deutsch, D., Clemens, J., Thiberge, S.Y., Guan, G. and Murthy, M. Shared Song Detector Neurons in Drosophila Male and Female Brains Drive Sex-Specific Behaviors.  Current Biology  (2019). 10.1016/j.cub.2019.08.008
• Graving, J. M., Chae, D., Naik, H., Li, L., Koger, B., Costelloe, B. R. & Couzin, I. D. DeepPoseKit, a software toolkit for fast and robust animal pose estimation using deep learning.  eLife  (2019). 10.7554/elife.47994
• Rodin, B. Ispitivanje uloge L-tipa Kriptokoroma na cirkalunarno i svjetlom uvjetovano ponašanje u morskom kolutićavom crvu Platynereis dumerilii.  (University of Rijeka, 2018). https://urn.nsk.hr/urn:nbn:hr:193:700539
• Ayers, T., Tsukamoto, H., Gühmann, M., Veedin Rajan, V.B. and Tessmar-Raible, K. A Go-type opsin mediates the shadow reflex in the annelid Platynereis dumerilii.  BMC biology  (2018). 10.1186/s12915-018-0505-8
• Ayers, T. Non-visual photoreception by G₀-type opsin in the annelid Platynereis dumerilii.  (University of Vienna. Zentrum für Molekulare Biologie, 2018). 10.25365/thesis.54364

Loopy

• Bedbrook, C.N., Nath, R.D., Zhang, L., Linderman, S.W., Brunet, A. and Deisseroth, K. Lifelong behavioral screen reveals an architecture of vertebrate aging  Science  (2026). 10.1126/science.aea9795
• Starić, D., Arnauer, L., Marshall-Pescini, S. and Range, F. Influence of agility training on body-size and object solidity perception in pet dogs.  PLoS One  (2026). 10.1371/journal.pone.0338647
• de Guinea, M., Landesman, R., Madden, J.R., Bugnyar, T., Bartan, Y. and Nathan, R. Integrating Lab‐and Field‐Based Approaches to Decipher Individuals' Response to Anthropogenic Change.  Ecology Letters  (2026). 10.1111/ele.70366
• Völter, C. J., Gerwisch, K., Berg, P., Virányi, Z. & Huber, L. Using mobile eye tracking to study dogs' understanding of human referential communication  Proceedings of the Royal Society B  (2025). 10.1098/rspb.2024.2765
• Brosche, K., Veit, A., Pérez Fraga, P., Wondrak, M., Andics, A. & Virányi, Z. Human ostension enhances attentiveness but not performance in domestic pigs  Scientific Reports  (2025). 10.1038/s41598-025-00511-7
• Jim, H.-L., Belfiore, K., Martinelli, E. B., Martinez, M., Range, F. & Marshall-Pescini, S. Do dogs form reputations of humans? No effect of age after indirect and direct experience in a food-giving situation  Animal Cognition  (2025). 10.1007/s10071-025-01967-w
• Vanhooland, L.C., Mager, C., Teuben, A., Bugnyar, T. and Massen, J.J. Comparing the Performances of Chimpanzees (Pan troglodytes) and Gorillas (Gorilla gorilla gorilla) in Two Self‐Awareness Tasks.  American Journal of Primatology  (2025). 10.1002/ajp.70010
• Matchette, S.R., Schneider, J., Drerup, C., Winters, S., Radford, A.N. and Herbert-Read, J.E. Antagonistic effects of predator color morph abundance and saliency on prey anti-predator responses.  Behavioral Ecology  (2025). 10.1093/beheco/araf059
• MacGillavry, T., Jadoul, Y. & Fusani, L. Dancing male riflebirds create a dynamic sensory trajectory that guides female choice  Current Biology  (2025). 10.1016/j.cub.2025.09.009
• Huber, L., van der Wolf, P., Menkveld, M., Riemer, S. & Völter, C. J. Canine perspective taking: Anticipating the behavior of an unseen human  iScience  (2025). 10.1016/j.isci.2025.111811
• Gerwisch, K., Mackie, L., Folkertsma, R. & Huber, L. Comparing overimitation between assistance dogs and family dogs at home  Applied Animal Behaviour Science  (2025). 10.1016/j.applanim.2025.106839
• Boucherie, P. H., Murari, G., Svitil, E. A. & Bugnyar, T. Rearing group size in young ravens: stress load or social opportunity?  Royal Society Open Science  (2025). 10.1098/rsos.250479
• Golden, R. K. & Dilger, R. N. Validating an updated protocol for the novel object recognition task in young pigs  Frontiers in Behavioral Neuroscience  (2025). 10.3389/fnbeh.2025.1480389
• Huber, A. S., Fugazza, C., Virányi, Z. & Range, F. Trainability, persuasion, or coercion: a study of human-dog and human-wolf interactions in early life  Frontiers in Ethology  (2025). 10.3389/fetho.2025.1616436
• Schmidjell, C. S., Völter, C. J. & Huber, L. Watched or not: Overimitation in dogs under different attentional states  Learning & Behavior  (2025). 10.3758/s13420-024-00635-2
• Pauen, S., Range, F. & Fugazza, C. Nonverbal Rationality? 2-Year-Old Children, Dogs, and Pigs Use Similar Action Evaluation Strategies  Child Development  (2025). 10.1111/cdev.70020
• Bapat, A., Kempf, A. E., Friry, S., Boucherie, P. H. & Bugnyar, T. Patterns of object play behaviour and its functional implications in free-flying common ravens  Scientific Reports  (2025). 10.1038/s41598-024-83856-9
• Spezie, G., Mann, D. C., Knoester, J., MacGillavry, T. & Fusani, L. Receiver response to high-intensity courtship differs with courter status in spotted bowerbirds Ptilonorhynchus maculatus  Royal Society Open Science  (2024). 10.1098/rsos.232015
• McGetrick, J., Fux, L., Schullern-Schrattenhofen, J., Rault, J.-L. & Range, F. Do pet dogs reciprocate the receipt of food from familiar and unfamiliar conspecifics?  Ethology  (2024). 10.1111/eth.13430
• Kawaguchi, Y., Virányi, Z., Faragó, T., Huber, L. & Völter, C. J. Cross-modal perception of puppies and adult conspecifics in dogs (Canis familiaris)  Journal of Comparative Psychology  (2024). 10.1037/com0000385
• Nowak, M., Martin-Cirera, A., Jenner, F. and Auer, U. Time budgets and weight shifting as indicators of pain in hospitalized horses  Frontiers in Pain Research  (2024). 10.3389/fpain.2024.1410302
• Drerup, C., Dunkley, K., How, M.J. and Herbert-Read, J.E. Cuttlefish adopt disruptive camouflage under dynamic lighting.  Current Biology  (2024). 10.1016/j.cub.2024.06.015
• Mackie, L. & Huber, L. Dogs with prior experience of a task still overimitate their caregiver  Scientific Reports  (2024). 10.1038/s41598-024-70700-3
• Cimarelli, G., Juskaite, M., Range, F. & Marshall-Pescini, S. Free-ranging dogs match a human's preference in a foraging task  Current Zoology  (2024). 10.1093/cz/zoad046
• Corral-Lopez, A., Kotrschal, A., Szorkovszky, A., Garate-Olaizola, M., Herbert-Read, J. E., van der Bijl, W., Romenskyy, M., Zeng, H.-L., Buechel, S. D., Fontrodona-Eslava, A., Pelckmans, K., Mank, J. E. & Kolm, N. Evolution of schooling drives changes in neuroanatomy and motion characteristics across predation contexts in guppies  Nature Communications  (2023). 10.1038/s41467-023-41635-6
• Hoffmann A., Couzin-Fuchs, E. Active smelling in the American cockroach  Journal of Experimental Biology  (2023). 10.1242/jeb.245337
• Garcia-Bonilla, M., Nair, A., Moore, J., Castaneyra-Ruiz, L., Zwick, S.H., Dilger, R.N., Fleming, S.A., Golden, R.K., Talcott, M.R., Isaacs, A.M. and Limbrick Jr, D.D. Impaired neurogenesis with reactive astrocytosis in the hippocampus in a porcine model of acquired hydrocephalus.  Experimental Neurology  (2023). 10.1016/j.expneurol.2023.114354
• Mackie, L. & Huber, L. Socially priming dogs in an overimitation task  Frontiers in Psychology  (2023). 10.3389/fpsyg.2023.1063132
• Völter C., Lonardo L., Steinmann M. G., Ramos C. F., Gerwisch K., Schranz M.T., Dobernig I., Huber L Unwilling or unable? Using three-dimensional tracking to evaluate dogs' reactions to differing human intentions.  Proceedings of the Royal Society B  (2023). 10.1098/rspb.2022.1621
• Völter, C. J., Starić, D. & Huber, L. Using machine learning to track dogs’ exploratory behaviour in the presence and absence of their caregiver  Animal Behaviour  (2023). 10.1016/j.anbehav.2023.01.004
• Wenig, K., Pacher, L. & Bugnyar, T. Testing the contagious nature of allopreening: bystander ravens are affected by conspecifics’ affiliative interactions.  Animal Behaviour  (2022). 10.1016/j.anbehav.2021.12.009
• Hoffmann, A., Couzin-Fuchs, E. Active smelling in the American cockroach  bioRxiv  (2022). 10.1101/2022.11.23.517676
• Demartsev, V., Manser, M. B., & Tattersall, G. J. Vocalization-associated respiration patterns: thermography-based monitoring and detection of preparation for calling.  Journal of Experimental Biology  (2022). 10.1242/jeb.243474
• Spezie, G., Fusani, L. Sneaky copulations by subordinate males suggest direct fitness benefits from male–male associations in spotted bowerbirds (Ptilonorhynchus maculatus).  Ethology  (2023). 10.1111/eth.13336
• Mitoyen, C., Quigley, C., Canoine, V., Colombo, S., Woelfl, S. and Fusani, L. Alteration of the temporal association between courtship audio and visual components affects female sexual response.  Integrative Zoology  (2022). 10.1111/1749-4877.12670
• Spezie, G., Fusani, L. Male–male associations in spotted bowerbirds (Ptilonorhynchus maculatus) exhibit attributes of courtship coalitions.  Behavioral Ecology and Sociobiology  (2023). 10.1007/s00265-022-03200-x
• Völter, C., Starić, D. & Huber, L. Using machine learning to track dogs’ exploratory behavior in presence and absence of their caregiver.  arXiv  (2022). 10.31234/osf.io/5x8m2
• Marshall-Pescini, M. L. M., Range, F. & Virányi, Z. Pet dogs’ behavioural reaction to their caregiver’s interactions with a third party: join in or interrupt?  Animals  (2022). 10.3390/ani12121574
• Rajan, V., Babu, V., Häfker, N. S., Arboleda, E., Poehn, B., Gossenreiter, T., Gerrard, E., Hofbauer, M., Mühlestein, C., Bileck, A., Gerner, C., Ribera D'Alcala, M., Buia, M. C., Hartl, M., Lucas, R. J. & Tessmar-Raible, K. Seasonal variation in UVA light drives hormonal and behavioural changes in a marine annelid via a ciliary opsin.  Nature Ecology & Evolution  (2021). 10.1038/s41559-020-01356-1
• Zekoll T, Waldherr M and Tessmar-Raible K Characterization of tmt-opsin2 in Medaka Fish Provides Insight Into the Interplay of Light and Temperature for Behavioral Regulation.  Frontiers in Physiology  (2021). 10.3389/fphys.2021.726941
• Loftus, J., Harel, R., Nuñez, C., & Crofoot, M. Ecological and social pressures interfere with homeostatic sleep regulation in the wild.  bioRxiv  (2021). 10.1101/2021.09.26.461870
• Robinson, L. M., Martínez, M., Leverett, K. L., Rossettie, M. S., Wilson, B. J., & Brosnan, S. F. Anything for a cheerio: Brown capuchins ( Sapajus [Cebus] apella ) consistently coordinate in an Assurance Game for unequal payoffs.  American Journal of Primatology  (2021). 10.1002/ajp.23321
• Pedretti, G., Wirobski, G., Range, F., & Marshall-Pescini, S. Artificially elevated oxytocin concentrations in pet dogs are associated with higher proximity-maintenance and gazing towards the owners.  Physiology & Behavior  (2021). 10.1016/j.physbeh.2021.113451
• Janisch, J., Mitoyen, C., Perinot, E., Spezie, G., Fusani, L. & Quigley, C. Video Recording and Analysis of Avian Movements and Behavior: Insights from Courtship Case Studies.  Integrative and Comparative Biology  (2021). 10.1093/icb/icab095
• Matchette, S. R. & Herbert-Read, J. E. Dynamic visual noise promotes social attraction, but does not affect group size preference, in a shoaling fish.  Animal Behaviour  (2021). 10.1016/j.anbehav.2021.04.017
• Ersoy, S., Maag, N., Boehly, T., Boucherie, P. H., & Bugnyar, T. Sex-specific parental care during postfledging in common ravens.  Animal Behaviour  (2021). 10.1016/j.anbehav.2021.09.004
• Revilla-i-Domingo, R., Rajan, V. B. V., Waldherr, M., Prohaczka, G., Musset, H., Orel, L., Gerrard, E., Smolka, M., Stockinger, A., Farlik, M., Lucas, R. J., Raible, F., & Tessmar-Raible, K. Analyses of Cephalic and Non-cephalic Sensory Cell Types Provide Insight into Joint Photo- and Mechanoreceptor Evolution.  eLife  (2021). 10.7554/elife.66144
• Janisch, J., Perinot, E., Fusani, L. & Quigley, C. Deciphering choreographies of elaborate courtship displays of golden-collared manakins using markerless motion capture.  Ethology  (2021). 10.1111/eth.13161
• Mitoyen, C., Quigley, C., Boehly, T. & Fusani L. Female behaviour is differentially associated with specific components of multimodal courtship in ring doves.  Animal Behaviour  (2021). 10.1016/j.anbehav.2020.12.014
• Günzel, Y., McCollum, J., Paoli, M., Galizia, C. G., Petelski, I. & Couzin-Fuchs E. Social modulation of individual preferences in cockroaches.  iScience  (2020). 10.1016/j.isci.2020.101964
• Kil, N., Ertelt, K. & Auer, U. Development and Validation of an Automated Video Tracking Model for Stabled Horses.  Animals  (2020). 10.3390/ani10122258
• Arboleda, E., Zurl, M., Waldherr, M. and Tessmar-Raible, K. Differential impacts of the head on Platynereis dumerilii peripheral circadian rhythms.  Frontiers in Physiology  (2019). 10.3389/fphys.2019.00900
• Rodin, B. Ispitivanje uloge L-tipa Kriptokoroma na cirkalunarno i svjetlom uvjetovano ponašanje u morskom kolutićavom crvu Platynereis dumerilii.  (University of Rijeka, 2018). https://urn.nsk.hr/urn:nbn:hr:193:700539
• Ayers, T. Non-visual photoreception by G₀-type opsin in the annelid Platynereis dumerilii.  (University of Vienna. Zentrum für Molekulare Biologie, 2018). 10.25365/thesis.54364

Kastl

• Short, N.E., Warren, E.C., Porter, I.E., Pinto, Y., Rodriguez, J., Sarkisyan, K., Bhatt, A.S., Brown, A.E. and Riglar, D.T. A whole organism screening platform identifies gut microbiome microproteins that modulate host metabolism.  bioRxiv  (2026). 10.64898/2026.02.11.705328
• Crombie, T.A., Pamminger, T., Andersen, E.C. and Glaberman, S. High-Throughput Toxicity Screening with C. elegans: Current Platforms, Key Advantages, and Future Directions  Environmental Science & Technology  (2026). 10.1021/acs.est.5c12562
• Bailly, T.P., Rossi, M., Valdés-Rodríguez, S., Schmitt, T., Frank, E.T. and Kronauer, D.J. Tolerance toward foreigners in ants requires chronic exposure for establishment but only sporadic exposure for maintenance  Current Biology  (2026). 10.1016/j.cub.2026.02.041
• Bhat, B.A., Jiang, N.J., Halitschke, R. and Ulrich, Y. Nematode infections induce distinct chemical signatures and provoke aggression in ants.  Biology Letters  (2026). 10.1098/rsbl.2025.0716
• Mastronardo, M. High-throughput Behavioral Assay (HTBA)  protocols.io  (2025). 10.17504/protocols.io.eq2ly4xzplx9/v1
• Weheliye, W.H., Rodriguez, J., Feriani, L., Javer, A., Uhlmann, V. and Brown, A.E. A neural network model enables worm tracking in challenging conditions and increases signal-to-noise ratio in phenotypic screens.  PLOS Computational Biology  (2025). 10.1371/journal.pcbi.1013345
• O'Brien, T.J., Barlow, I.L., Feriani, L. and Brown, A.E. High-throughput tracking enables systematic phenotyping and drug repurposing in C. elegans disease models  eLife  (2025). 10.7554/elife.92491.4
• García-Garví, A. and Sánchez-Salmerón, A.J. High-throughput behavioral screening in Caenorhabditis elegans using machine learning for drug repurposing.  Scientific Reports  (2025). 10.1038/s41598-025-10370-x
• Perez, D.M., Greenway, R., Stier, T., Font-Massot, N., Pertzelan, A. and Ding, S.S. Towering behavior and collective dispersal in Caenorhabditis nematodes  Current Biology  (2025). 10.1016/j.cub.2025.05.026
• Matchette, S.R., Butler, S.J., Llanos, C.E.R. and Herbert-Read, J.E. Environmental visual complexity increases the foraging success of mesopredators by promoting explorative behaviours.  Animal Behaviour  (2025). 10.1016/j.anbehav.2024.123057
• Barlow, I. & Shirtliff-Hinds, T. Disease model screen protocol v2  protocols.io  (2025). 10.17504/protocols.io.kxygx9y5og8j/v2
• Njume, F. N. et al. A Lipid Transfer Protein Ensures Nematode Cuticular Impermeability.  iScience [preprint]  (2022). 10.2139/ssrn.4052955
• Barlow, I., Feriani, L., Minga, E., McDermott-Rouse, A., O’Brien, T., Liu, Z., Hofbauer, M., Stowers, J. R., Andersen, E. C., Ding, S. S., & Brown, A. E. X. Megapixel camera arrays for high-resolution animal tracking in multiwell plates.  Communications Biology  (2022). 10.1038/s42003-022-03206-1
• Zekoll T, Waldherr M and Tessmar-Raible K Characterization of tmt-opsin2 in Medaka Fish Provides Insight Into the Interplay of Light and Temperature for Behavioral Regulation.  Frontiers in Physiology  (2021). 10.3389/fphys.2021.726941
• McDermott‐Rouse, A., Minga, E., Barlow, I., Feriani, L., Harlow, P. H., Flemming, A. J., & Brown, A. E. X. Behavioral fingerprints predict insecticide and anthelmintic mode of action.  Molecular Systems Biology  (2021). 10.15252/msb.202110267
• Barlow, I., McDermott-Rouse, A. & Feriani, L. Syngenta divergent strain screen protocol  protocols.io  (2020). 10.17504/protocols.io.bjpukmjw
• Arboleda, E., Zurl, M., Waldherr, M. and Tessmar-Raible, K. Differential impacts of the head on Platynereis dumerilii peripheral circadian rhythms.  Frontiers in Physiology  (2019). 10.3389/fphys.2019.00900
• Ayers, T., Tsukamoto, H., Gühmann, M., Veedin Rajan, V.B. and Tessmar-Raible, K. A Go-type opsin mediates the shadow reflex in the annelid Platynereis dumerilii.  BMC biology  (2018). 10.1186/s12915-018-0505-8

VR

• Amichay, G., Li, L., Nagy, M. and Couzin, I.D. Revealing the mechanism and function underlying pairwise temporal coupling in collective motion.  Nature Communications  (2024). 10.1038/s41467-024-48458-z
• Li, L., Nagy, M., Amichay, G., Wu, R., Wang, W., Deussen, O., Rus, D. & Couzin, I. D. Reverse engineering the control law for schooling in zebrafish using virtual reality  Science Robotics  (2025). 10.1126/scirobotics.adq6784
• Sayin, S., Couzin-Fuchs, E., Petelski, I., Günzel, Y., Salahshour, M., Lee, C.Y., Graving, J.M., Li, L., Deussen, O., Sword, G.A. and Couzin, I.D. The behavioral mechanisms governing collective motion in swarming locusts.  Science  (2025). 10.1126/science.adq7832
• Sridhar, V. H., Li, L., Gorbonos, D., Nagy, M., Schell, B. R., Sorochkin, T., Gov, N. S., & Couzin, I. D. The geometry of decision-making in individuals and collectives.  PNAS  (2021). 10.1073/pnas.2102157118
• Schell, B. R. Employing virtual reality to reveal individual locusts' decision-making.  (University of Konstanz, 2020). http://nbn-resolving.de/urn:nbn:de:bsz:352-2-d7hoztrcxjqb1
• Naik, H., Bastien, R., Navab, N. & Couzin, I. D. Animals in Virtual Environments.  IEEE Transactions on Visualization and Computer Graphics  (2020). 10.1109/tvcg.2020.2973063
• Stowers, J. R., Hofbauer, M., Bastien, R., Griessner, J., Higgins, P., Farooqui, S., Fischer, R. M., Nowikovsky, K., Haubensak, W., Couzin, I. D., Tessmar-Raible, K. & Straw, A. D. Virtual reality for freely moving animals.  Nature Methods  (2017). 10.1038/nmeth.4399
• Chouinard-Thuly, L., Gierszewski, S., Rosenthal, G. G., Reader, S. M., Rieucau, G., Woo, K. L., Gerlai, R., Tedore, C., J. I., Spencer , Stowers, J. R., Frommen, J. G., Dolins, F. L. & Witte, K. Technical and conceptual considerations for using animated stimuli in studies of animal behavior.  Current Zoology  (2017). 10.1093/cz/zow104
• Stowers, J. R., Fuhrmann, A., Hofbauer, M., Streinzer, M., Schmid, A., Dickinson, M. H. & Straw, A. D. Reverse engineering animal vision with virtual reality and genetics.  IEEE Computer  (2014). 10.1109/mc.2014.190

General

• Rutter, J. W., Dekker, L., Clare, C., Slendebroek, Z. F., Owen, K. A., McDonald, J. A. K., Nair, S. P., Fedorec, A. J. H. & Barnes, C. P. A bacteriocin expression platform for targeting pathogenic bacterial species  Nature Communications  (2024). 10.1038/s41467-024-50591-8
• Saraceno, T., Bisshop, A., Krell, A., & Mühlethaler, R. Arachnid Orchestras: Artistic Research in Vibrational Interspecies Communication  Biotremology: Studying Vibrational Behavior  (2019). 10.1007/978-3-030-22293-2_24
• Bath, D. E., Stowers, J. R., Hörmann, D., Poehlmann, A., Dickson, B. J. & Straw, A. D. FlyMAD: rapid thermogenetic control of neuronal activity in freely walking Drosophila.  Nature Methods  (2014). 10.1038/nmeth.2973

Hexerei

• Saraceno, T., Bisshop, A., Krell, A., & Mühlethaler, R. Arachnid Orchestras: Artistic Research in Vibrational Interspecies Communication  Biotremology: Studying Vibrational Behavior  (2019). 10.1007/978-3-030-22293-2_24