loopbio

Motif

• Völter C., Lonardo L., Steinmann M. G., Ramos C. F., Gerwisch K., Schranz M.T., Dobernig I., Huber L Unwilling or unable? Using three-dimensional tracking to evaluate dogs' reactions to differing human intentions.  Proceedings of the Royal Society B  (2023). 10.1098/rspb.2022.1621
• Neubauer, L. C., Davidson, J. D., Wild, B., Dormagen, D. M., Landgraf, T., Couzin, I. D., & Smith, M. L. Honey bee drones are synchronously hyperactive inside the nest.  arXiv  (2023). 10.1101/2023.01.19.524638
• Pereira  T.D. et al. SLEAP: A deep learning system for multi-animal pose tracking  Nature Methods  (2022). 10.1038/s41592-022-01426-1
• Hoffmann, A., Couzin-Fuchs, E. Active smelling in the American cockroach  arXiv  (2022). 10.1101/2022.11.23.517676
• Smith, M. L., Davidson, J. D., Wild, B., Dormagen, D. M., Landgraf, T., & Couzin, I. D. Behavioral variation across the days and lives of honey bees.  iScience  (2022). 10.1016/j.isci.2022.104842
• Njume, F. N. et al. A Lipid Transfer Protein Ensures Nematode Cuticular Impermeability.  iScience [preprint]  (2022). 10.2139/ssrn.4052955
• Mitoyen, C., Quigley, C., Canoine, V., Colombo, S., Woelfl, S. and Fusani, L. Alteration of the temporal association between courtship audio and visual components affects female sexual response.  Integrative Zoology  (2022). 10.1111/1749-4877.12670
• Barlow, I., Feriani, L., Minga, E., McDermott-Rouse, A., O’Brien, T., Liu, Z., Hofbauer, M., Stowers, J. R., Andersen, E. C., Ding, S. S., & Brown, A. E. X. Megapixel camera arrays for high-resolution animal tracking in multiwell plates.  Communications Biology  (2022). 10.1038/s42003-022-03206-1
• Wang, Z. Y., McKenzie-Smith, G. C., Liu, W., Cho, H. J., Pereira, T., Dhanerawala, Z., Shaevitz, J. W., & Kocher, S. D. Isolation disrupts social interactions and destabilizes brain development in bumblebees.  bioRxiv  (2021). 10.1101/2021.12.16.472962
• Rajan, V., Babu, V., Häfker, N. S., Arboleda, E., Poehn, B., Gossenreiter, T., Gerrard, E., Hofbauer, M., Mühlestein, C., Bileck, A., Gerner, C., Ribera D'Alcala, M., Buia, M. C., Hartl, M., Lucas, R. J. & Tessmar-Raible, K. Seasonal variation in UVA light drives hormonal and behavioural changes in a marine annelid via a ciliary opsin.  Nature Ecology & Evolution  (2021). 10.1038/s41559-020-01356-1
• Zekoll T, Waldherr M and Tessmar-Raible K Characterization of tmt-opsin2 in Medaka Fish Provides Insight Into the Interplay of Light and Temperature for Behavioral Regulation.  Frontiers in Physiology  (2021). 10.3389/fphys.2021.726941
• Fontinha, B. M., Zekoll, T., Al-Rawi, M., Gallach, M., Reithofer, F., Barker, A. J., Hofbauer, M., Fischer, R. M., Von Haeseler, A., Baier, H. & Tessmar-Raible, K. TMT-Opsins differentially modulate medaka brain function in a context-dependent manner.  PLOS Biology  (2021). 10.1371/journal.pbio.3001012
• Janisch, J., Mitoyen, C., Perinot, E., Spezie, G., Fusani, L. & Quigley, C. Video Recording and Analysis of Avian Movements and Behavior: Insights from Courtship Case Studies.  Integrative and Comparative Biology  (2021). 10.1093/icb/icab095
• McDermott‐Rouse, A., Minga, E., Barlow, I., Feriani, L., Harlow, P. H., Flemming, A. J., & Brown, A. E. X. Behavioral fingerprints predict insecticide and anthelmintic mode of action.  Molecular Systems Biology  (2021). 10.15252/msb.202110267
• Revilla-i-Domingo, R., Rajan, V. B. V., Waldherr, M., Prohaczka, G., Musset, H., Orel, L., Gerrard, E., Smolka, M., Stockinger, A., Farlik, M., Lucas, R. J., Raible, F., & Tessmar-Raible, K. Analyses of Cephalic and Non-cephalic Sensory Cell Types Provide Insight into Joint Photo- and Mechanoreceptor Evolution.  Life Science Weekly  (2021). 10.7554/elife.66144
• Janisch, J., Perinot, E., Fusani, L. & Quigley, C. Deciphering choreographies of elaborate courtship displays of golden-collared manakins using markerless motion capture.  Ethology  (2021). 10.1111/eth.13161
• Smith, M.L., Davidson, J.D., Wild, B., Dormagen, D.M., Landgraf, T. and Couzin, I.D The dominant axes of lifetime behavioral variation in honey bees.  arXiv  (2021). 10.1101/2021.04.15.440020
• Roemschied, F. A., Pacheco, D. A., Ireland, E. C., Li, X., Aragon, M. J., Pang, R., & Murthy, M. Flexible Circuit Mechanisms for Context-Dependent Song Sequencing.  bioRxiv  (2021). 10.1101/2021.11.01.466727
• Mitoyen, C., Quigley, C., Boehly, T. & Fusani L. Female behaviour is differentially associated with specific components of multimodal courtship in ring doves.  Animal Behaviour  (2021). 10.1016/j.anbehav.2020.12.014
• Günzel, Y., McCollum, J., Paoli, M., Galizia, C. G., Petelski, I. & Couzin-Fuchs E. Social modulation of individual preferences in cockroaches.  iScience  (2020). 10.1016/j.isci.2020.101964
• Li, L., Nagy, M., Graving, J. M., Bak-Coleman, J., Xie, G. & Couzin, I. D.  Vortex phase matching as a strategy for schooling in robots and in fish.  Nature Communications  (2020). 10.1038/s41467-020-19086-0
• Graving, J. M., Chae, D., Naik, H., Li, L., Koger, B., Costelloe, B. R. & Couzin, I. D. DeepPoseKit, a software toolkit for fast and robust animal pose estimation using deep learning.  eLife  (2019). 10.7554/elife.47994
• Rodin, B. Ispitivanje uloge L-tipa Kriptokoroma na cirkalunarno i svjetlom uvjetovano ponašanje u morskom kolutićavom crvu Platynereis dumerilii.  (University of Rijeka, 2018). https://urn.nsk.hr/urn:nbn:hr:193:700539
• Ayers, T. Non-visual photoreception by G₀-type opsin in the annelid Platynereis dumerilii.  (University of Vienna. Zentrum für Molekulare Biologie, 2018). 10.25365/thesis.54364

Loopy

• Garcia-Bonilla, M., Nair, A., Moore, J., Castaneyra-Ruiz, L., Zwick, S.H., Dilger, R.N., Fleming, S.A., Golden, R.K., Talcott, M.R., Isaacs, A.M. and Limbrick Jr, D.D. Impaired neurogenesis with reactive astrocytosis in the hippocampus in a porcine model of acquired hydrocephalus.  Experimental Neurology  (2023). 10.1016/j.expneurol.2023.114354
• Völter C., Lonardo L., Steinmann M. G., Ramos C. F., Gerwisch K., Schranz M.T., Dobernig I., Huber L Unwilling or unable? Using three-dimensional tracking to evaluate dogs' reactions to differing human intentions.  Proceedings of the Royal Society B  (2023). 10.1098/rspb.2022.1621
• Wenig, K., Pacher, L. & Bugnyar, T. Testing the contagious nature of allopreening: bystander ravens are affected by conspecifics’ affiliative interactions.  Animal Behaviour  (2022). 10.1016/j.anbehav.2021.12.009
• Hoffmann, A., Couzin-Fuchs, E. Active smelling in the American cockroach  arXiv  (2022). 10.1101/2022.11.23.517676
• Demartsev, V., Manser, M. B., & Tattersall, G. J. Vocalization-associated respiration patterns: thermography-based monitoring and detection of preparation for calling.  Journal of Experimental Biology  (2022). 10.1242/jeb.243474
• Spezie, G., Fusani, L. Sneaky copulations by subordinate males suggest direct fitness benefits from male–male associations in spotted bowerbirds (Ptilonorhynchus maculatus).  Ethology  (2023). 10.1111/eth.13336
• Mitoyen, C., Quigley, C., Canoine, V., Colombo, S., Woelfl, S. and Fusani, L. Alteration of the temporal association between courtship audio and visual components affects female sexual response.  Integrative Zoology  (2022). 10.1111/1749-4877.12670
• Spezie, G., Fusani, L. Male–male associations in spotted bowerbirds (Ptilonorhynchus maculatus) exhibit attributes of courtship coalitions.  Behavioral Ecology and Sociobiology  (2023). 10.1007/s00265-022-03200-x
• Völter, C., Starić, D. & Huber, L. Using machine learning to track dogs’ exploratory behavior in presence and absence of their caregiver.  arXiv  (2022). 10.31234/osf.io/5x8m2
• Rajan, V., Babu, V., Häfker, N. S., Arboleda, E., Poehn, B., Gossenreiter, T., Gerrard, E., Hofbauer, M., Mühlestein, C., Bileck, A., Gerner, C., Ribera D'Alcala, M., Buia, M. C., Hartl, M., Lucas, R. J. & Tessmar-Raible, K. Seasonal variation in UVA light drives hormonal and behavioural changes in a marine annelid via a ciliary opsin.  Nature Ecology & Evolution  (2021). 10.1038/s41559-020-01356-1
• Zekoll T, Waldherr M and Tessmar-Raible K Characterization of tmt-opsin2 in Medaka Fish Provides Insight Into the Interplay of Light and Temperature for Behavioral Regulation.  Frontiers in Physiology  (2021). 10.3389/fphys.2021.726941
• Loftus, J., Harel, R., Nuñez, C., & Crofoot, M. Ecological and social pressures interfere with homeostatic sleep regulation in the wild.  bioRxiv  (2021). 10.1101/2021.09.26.461870
• Robinson, L. M., Martínez, M., Leverett, K. L., Rossettie, M. S., Wilson, B. J., & Brosnan, S. F. Anything for a cheerio: Brown capuchins ( Sapajus [Cebus] apella ) consistently coordinate in an Assurance Game for unequal payoffs.  American Journal of Primatology  (2021). 10.1002/ajp.23321
• Pedretti, G., Wirobski, G., Range, F., & Marshall-Pescini, S. Artificially elevated oxytocin concentrations in pet dogs are associated with higher proximity-maintenance and gazing towards the owners.  Physiology & Behavior  (2021). 10.1016/j.physbeh.2021.113451
• Janisch, J., Mitoyen, C., Perinot, E., Spezie, G., Fusani, L. & Quigley, C. Video Recording and Analysis of Avian Movements and Behavior: Insights from Courtship Case Studies.  Integrative and Comparative Biology  (2021). 10.1093/icb/icab095
• Matchette, S. R. & Herbert-Read, J. E. Dynamic visual noise promotes social attraction, but does not affect group size preference, in a shoaling fish.  Animal Behaviour  (2021). 10.1016/j.anbehav.2021.04.017
• Ersoy, S., Maag, N., Boehly, T., Boucherie, P. H., & Bugnyar, T. Sex-specific parental care during postfledging in common ravens.  Animal Behaviour  (2021). 10.1016/j.anbehav.2021.09.004
• Revilla-i-Domingo, R., Rajan, V. B. V., Waldherr, M., Prohaczka, G., Musset, H., Orel, L., Gerrard, E., Smolka, M., Stockinger, A., Farlik, M., Lucas, R. J., Raible, F., & Tessmar-Raible, K. Analyses of Cephalic and Non-cephalic Sensory Cell Types Provide Insight into Joint Photo- and Mechanoreceptor Evolution.  Life Science Weekly  (2021). 10.7554/elife.66144
• Janisch, J., Perinot, E., Fusani, L. & Quigley, C. Deciphering choreographies of elaborate courtship displays of golden-collared manakins using markerless motion capture.  Ethology  (2021). 10.1111/eth.13161
• Mitoyen, C., Quigley, C., Boehly, T. & Fusani L. Female behaviour is differentially associated with specific components of multimodal courtship in ring doves.  Animal Behaviour  (2021). 10.1016/j.anbehav.2020.12.014
• Günzel, Y., McCollum, J., Paoli, M., Galizia, C. G., Petelski, I. & Couzin-Fuchs E. Social modulation of individual preferences in cockroaches.  iScience  (2020). 10.1016/j.isci.2020.101964
• Kil, N., Ertelt, K. & Auer, U. Development and Validation of an Automated Video Tracking Model for Stabled Horses.  Animals  (2020). 10.3390/ani10122258
• Rodin, B. Ispitivanje uloge L-tipa Kriptokoroma na cirkalunarno i svjetlom uvjetovano ponašanje u morskom kolutićavom crvu Platynereis dumerilii.  (University of Rijeka, 2018). https://urn.nsk.hr/urn:nbn:hr:193:700539
• Ayers, T. Non-visual photoreception by G₀-type opsin in the annelid Platynereis dumerilii.  (University of Vienna. Zentrum für Molekulare Biologie, 2018). 10.25365/thesis.54364

Kastl

• Njume, F. N. et al. A Lipid Transfer Protein Ensures Nematode Cuticular Impermeability.  iScience [preprint]  (2022). 10.2139/ssrn.4052955
• Barlow, I., Feriani, L., Minga, E., McDermott-Rouse, A., O’Brien, T., Liu, Z., Hofbauer, M., Stowers, J. R., Andersen, E. C., Ding, S. S., & Brown, A. E. X. Megapixel camera arrays for high-resolution animal tracking in multiwell plates.  Communications Biology  (2022). 10.1038/s42003-022-03206-1
• Zekoll T, Waldherr M and Tessmar-Raible K Characterization of tmt-opsin2 in Medaka Fish Provides Insight Into the Interplay of Light and Temperature for Behavioral Regulation.  Frontiers in Physiology  (2021). 10.3389/fphys.2021.726941
• McDermott‐Rouse, A., Minga, E., Barlow, I., Feriani, L., Harlow, P. H., Flemming, A. J., & Brown, A. E. X. Behavioral fingerprints predict insecticide and anthelmintic mode of action.  Molecular Systems Biology  (2021). 10.15252/msb.202110267

VR

• Sridhar, V. H., Li, L., Gorbonos, D., Nagy, M., Schell, B. R., Sorochkin, T., Gov, N. S., & Couzin, I. D. The geometry of decision-making in individuals and collectives.  PNAS  (2021). 10.1073/pnas.2102157118
• Schell, B. R. Employing virtual reality to reveal individual locusts' decision-making.  (University of Konstanz, 2020). http://nbn-resolving.de/urn:nbn:de:bsz:352-2-d7hoztrcxjqb1
• Naik, H., Bastien, R., Navab, N. & Couzin, I. D. Animals in Virtual Environments.  arXiv  (2020). 10.1109/tvcg.2020.2973063
• Stowers, J. R., Hofbauer, M., Bastien, R., Griessner, J., Higgins, P., Farooqui, S., Fischer, R. M., Nowikovsky, K., Haubensak, W., Couzin, I. D., Tessmar-Raible, K. & Straw, A. D. Virtual reality for freely moving animals.  Nature Methods  (2017). 10.1038/nmeth.4399
• Chouinard-Thuly, L., Gierszewski, S., Rosenthal, G. G., Reader, S. M., Rieucau, G., Woo, K. L., Gerlai, R., Tedore, C., J. I., Spencer , Stowers, J. R., Frommen, J. G., Dolins, F. L. & Witte, K. Technical and conceptual considerations for using animated stimuli in studies of animal behavior.  Current Zoology  (2017). 10.1093/cz/zow104
• Stowers, J. R., Fuhrmann, A., Hofbauer, M., Streinzer, M., Schmid, A., Dickinson, M. H. & Straw, A. D. Reverse engineering animal vision with virtual reality and genetics.  IEEE Computer  (2014). 10.1109/mc.2014.190

General

• Saraceno, T., Bisshop, A., Krell, A., & Mühlethaler, R. Arachnid Orchestras: Artistic Research in Vibrational Interspecies Communication  Biotremology: Studying Vibrational Behavior  (2019). 10.1007/978-3-030-22293-2_24
• Bath, D. E., Stowers, J. R., Hörmann, D., Poehlmann, A., Dickson, B. J. & Straw, A. D. FlyMAD: rapid thermogenetic control of neuronal activity in freely walking Drosophila.  Nature Methods  (2014). 10.1038/nmeth.2973

Hexerei

• Saraceno, T., Bisshop, A., Krell, A., & Mühlethaler, R. Arachnid Orchestras: Artistic Research in Vibrational Interspecies Communication  Biotremology: Studying Vibrational Behavior  (2019). 10.1007/978-3-030-22293-2_24